Pairwise fitting emdb-5034 on pdb-3j1v by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3j1v by gmfit(PID:2173151).





RANK[1] Corr.Coeff:0.464

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3j1v)

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b'A REFINED MODEL OF THE PROTOTYPICAL SALMONELLA TYPHIMURIUM T3SS BASAL ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.464
0.447
0.441
0.434
0.433
0.432
0.413
0.403
0.163
0.146







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j1v"(PDB-format) or 
 "3j1v"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.734655,-0.678121,-0.020839 177.762386 center 0,0,0 model #1
move 170.078689,189.730795,162.932356 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!