Pairwise fitting emdb-5034 on pdb-2yew by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-2yew by gmfit(PID:3938614).





RANK[1] Corr.Coeff:0.412

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-2yew)

display:



color:


b'MODELING BARMAH FOREST VIRUS STRUCTURAL PROTEINS                      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.412
0.357
0.321
0.317
0.314
0.305
0.302
0.288
0.277
0.265







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2yew"(PDB-format) or 
 "2yew"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.786893,0.616979,-0.011681 115.844359 center 0,0,0 model #1
move -225.290940,43.540421,296.871860 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!