Pairwise fitting emdb-5034 on pdb-2r6p by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-2r6p by gmfit(PID:3611813).





RANK[1] Corr.Coeff:0.342

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-2r6p)

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b'FIT OF E PROTEIN AND FAB 1A1D-2 INTO 24 ANGSTROM RESOLUTION CRYOEM MAP' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.342
0.290
0.272
0.251
0.246
0.241
0.240
0.230
0.228
0.227







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2r6p"(PDB-format) or 
 "2r6p"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.143485,0.491471,0.858993 158.896573 center 0,0,0 model #1
move 275.185854,-127.056234,82.554272 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!