Pairwise fitting emdb-5023 on pdb-5mcy by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-5mcy by gmfit(PID:3630661).





RANK[1] Corr.Coeff:0.532

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-5mcy)

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b'THE STRUCTURE OF THE MATURE HIV-1 CA PENTAMER IN INTACT VIRUS         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.532
0.531
0.531
0.530
0.452
0.451
0.449
0.447
0.271
0.269







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mcy"(PDB-format) or 
 "5mcy"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.002517,0.000860,-0.999996 176.331996 center 0,0,0 model #1
move 335.775464,359.971948,47.464674 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!