Pairwise fitting emdb-5023 on pdb-5l9t by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-5l9t by gmfit(PID:39944).





RANK[1] Corr.Coeff:0.458

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-5l9t)

display:



color:


b'MODEL OF HUMAN ANAPHASE-PROMOTING COMPLEX/CYCLOSOME (APC/C-CDH1) WITH ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.458
0.440
0.438
0.426
0.424
0.406
0.403
0.398
0.384
0.329







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5l9t"(PDB-format) or 
 "5l9t"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.525660,-0.478042,0.703675 141.942825 center 0,0,0 model #1
move 345.821126,122.745268,460.266431 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!