Pairwise fitting emdb-5023 on pdb-3kk5 by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-3kk5 by gmfit(PID:2174555).





RANK[1] Corr.Coeff:0.523

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-3kk5)

display:



color:


b'CRYSTAL STRUCTURE OF PBCV-1 VP54 FITTED INTO A CRYO-EM RECONSTRUCTION ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.523
0.522
0.521
0.521
0.519
0.517
0.515
0.513
0.354
0.299







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3kk5"(PDB-format) or 
 "3kk5"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.686422,-0.064128,0.724370 15.100799 center 0,0,0 model #1
move -101.582531,-263.135402,177.922454 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!