Pairwise fitting emdb-5023 on pdb-3j4u by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-3j4u by gmfit(PID:3724406).





RANK[1] Corr.Coeff:0.617

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-3j4u)

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b'A NEW TOPOLOGY OF THE HK97-LIKE FOLD REVEALED IN BORDETELLA           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.617
0.583
0.582
0.580
0.505
0.501
0.499
0.471
0.259
0.249







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j4u"(PDB-format) or 
 "3j4u"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.024350,-0.099384,-0.994751 175.461219 center 0,0,0 model #1
move 244.100570,242.483379,139.144976 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!