Pairwise fitting emdb-5023 on emdb-8448 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-8448 by gmfit(PID:536149).





RANK[1] Corr.Coeff:0.524

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-8448)

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Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D3 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.524
0.520
0.520
0.514
0.511
0.503
0.503
0.483
0.360
0.354







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8448.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.043069,-0.263846,0.963603 53.455460 center 0,0,0 model #1
move 290.842632,-71.111825,68.145741 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!