Pairwise fitting emdb-5023 on emdb-8447 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-8447 by gmfit(PID:1216854).

RANK[1] Corr.Coeff:0.536 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-8447)
display:
color:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D2 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.536 0.526 0.524 0.519 0.495 0.490 0.489 0.484 0.336 0.330

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8447.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.020186,0.014701,-0.999688 129.530026 center 0,0,0 model #1
    move 203.280303,493.558883,110.810914 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!