Pairwise fitting emdb-5023 on emdb-8102 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-8102 by gmfit(PID:1337587).





RANK[1] Corr.Coeff:0.414

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-8102)

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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 3 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.414
0.403
0.402
0.395
0.356
0.356
0.353
0.342
0.329
0.317







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8102.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.792381,0.194643,0.578141 134.842876 center 0,0,0 model #1
move 246.714744,141.110155,392.967217 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!