Pairwise fitting emdb-5023 on emdb-8101 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-8101 by gmfit(PID:1593750).

RANK[1] Corr.Coeff:0.418 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-8101)
display:
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 2 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.418 0.397 0.387 0.385 0.383 0.379 0.369 0.365 0.313 0.307

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8101.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.123757,0.781264,-0.611809 159.866640 center 0,0,0 model #1
    move 211.999650,149.981909,400.278941 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!