Pairwise fitting emdb-5023 on emdb-6149 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-6149 by gmfit(PID:1476114).

RANK[1] Corr.Coeff:0.520 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-6149)
display:
color:
Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.520 0.519 0.516 0.515 0.513 0.498 0.489 0.488 0.407 0.402

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_6149.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.659565,-0.698917,-0.276567 118.464457 center 0,0,0 model #1
    move 143.545770,170.830929,-211.688529 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!