Pairwise fitting emdb-5023 on emdb-6084 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-6084 by gmfit(PID:3966023).





RANK[1] Corr.Coeff:0.436

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-6084)

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color:


Anaphase Promoting Complex with bound Ube2S [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.436
0.426
0.418
0.418
0.415
0.415
0.414
0.408
0.330
0.326







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6084.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.689791,0.412613,0.594928 107.775883 center 0,0,0 model #1
move 88.812076,59.669044,-39.249787 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!