Pairwise fitting emdb-5023 on emdb-5807 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-5807 by gmfit(PID:4106138).

RANK[1] Corr.Coeff:0.457 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-5807)
display:
color:
Negative-stain electron microscopy reconstruction of Tetrahymena telomerase (Teb1-f, conformation II) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.457 0.434 0.434 0.432 0.420 0.420 0.419 0.415 0.307 0.301

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5807.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.066608,0.138663,0.988097 151.164616 center 0,0,0 model #1
    move 257.429581,53.237183,-156.226793 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5807)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4106138)]