Pairwise fitting emdb-5023 on emdb-5553 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-5553 by gmfit(PID:2244383).





RANK[1] Corr.Coeff:0.794

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-5553)

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Molecular structure of the native HIV-1 Env trimer bound to m36: Membrane region [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.794
0.792
0.791
0.789
0.723
0.722
0.722
0.719
0.220
0.219







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5553.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.004588,-0.001875,0.999988 171.502767 center 0,0,0 model #1
move 441.309010,378.516969,0.564609 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!