Pairwise fitting emdb-5023 on emdb-5022 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-5022 by gmfit(PID:3498439).





RANK[1] Corr.Coeff:0.773

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-5022)

display:



color:


Molecular Structure of Unliganded Native HIV-1 gp120 trimer: Membrane region [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.773
0.772
0.771
0.762
0.724
0.719
0.718
0.714
0.199
0.197







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5022.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.002478,0.004155,-0.999988 17.239166 center 0,0,0 model #1
move -47.517476,72.333077,-5.728779 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!