Pairwise fitting emdb-5023 on emdb-3206 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-3206 by gmfit(PID:1313564).

RANK[1] Corr.Coeff:0.527 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-3206)
display:
color:
Revisited cryo-EM structure of Inducible lysine decarboxylase complexed with LARA domain of RavA ATPase [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.527 0.525 0.524 0.524 0.521 0.520 0.518 0.515 0.275 0.271

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3206.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.849340,0.527844,0.001350 179.680990 center 0,0,0 model #1
    move 93.268942,274.160389,101.047423 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!