Pairwise fitting emdb-5023 on emdb-3204 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-3204 by gmfit(PID:4124399).





RANK[1] Corr.Coeff:0.574

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-3204)

display:



color:


Structures of E.coli lysine decarboxylases [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.574
0.564
0.562
0.562
0.562
0.561
0.560
0.559
0.290
0.290







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3204.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.033095,0.029572,-0.999015 173.079122 center 0,0,0 model #1
move 183.079680,233.123644,-69.788917 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!