Pairwise fitting emdb-5023 on emdb-2706 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-2706 by gmfit(PID:1652938).

RANK[1] Corr.Coeff:0.683 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-2706)
display:
color:
The structure of the immature HIV-1 capsid in intact virus particles at sub-nm resolution [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.683 0.683 0.677 0.658 0.551 0.549 0.549 0.542 0.278 0.277

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2706.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.002349,-0.000208,0.999997 154.393897 center 0,0,0 model #1
    move 415.853029,237.766941,43.020505 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!