Pairwise fitting emdb-5023 on emdb-2174 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-2174 by gmfit(PID:4013052).





RANK[1] Corr.Coeff:0.337

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-2174)

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Negative stain electron microscopy of a CSN-SCF~Nedd8/Fbw7 complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.337
0.325
0.323
0.318
0.312
0.305
0.303
0.300
0.263
0.259







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2174.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.917577,0.318131,-0.238424 101.880550 center 0,0,0 model #1
move -290.738397,78.397210,-34.285286 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!