Pairwise fitting emdb-5023 on emdb-2173 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-2173 by gmfit(PID:1194143).

RANK[1] Corr.Coeff:0.372 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-2173)
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Negative stain electron microscopy of a CSN-SCF~Nedd8/Skp2/Cks1 complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.372 0.355 0.353 0.328 0.323 0.314 0.313 0.306 0.271 0.270

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2173.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.635769,-0.564802,0.526115 100.240798 center 0,0,0 model #1
    move 149.028614,25.656672,-266.703083 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!