Pairwise fitting emdb-5023 on emdb-1977 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-1977 by gmfit(PID:3916233).





RANK[1] Corr.Coeff:0.306

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-1977)

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Extracellular complexes of the hematopoietic human and mouse CSF-1 receptor are driven by common assembly principles. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.306
0.284
0.276
0.276
0.276
0.272
0.266
0.264
0.257
0.257







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1977.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.117359,-0.985625,0.121535 81.234573 center 0,0,0 model #1
move 202.305283,-106.298454,-25.004103 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!