Pairwise fitting emdb-5023 on emdb-1209 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-1209 by gmfit(PID:4114330).

RANK[1] Corr.Coeff:0.453 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-1209)
display:
color:
Three-dimensional structure of the human DNA-PKcs/Ku70/Ku80 complex assembled on DNA and its implications for DNA DSB repair. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.453 0.444 0.425 0.422 0.422 0.421 0.412 0.398 0.301 0.291

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1209.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.026853,0.000806,0.999639 150.602532 center 0,0,0 model #1
    move 271.890426,79.993965,-103.785803 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1209)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4114330)]