Pairwise fitting emdb-5023 on emdb-1209 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-1209 by gmfit(PID:37500).





RANK[1] Corr.Coeff:0.453

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-1209)

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Three-dimensional structure of the human DNA-PKcs/Ku70/Ku80 complex assembled on DNA and its implications for DNA DSB repair. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.453
0.444
0.425
0.422
0.422
0.421
0.412
0.398
0.301
0.291







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1209.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.026853,0.000806,0.999639 150.602532 center 0,0,0 model #1
move 271.890426,79.993965,-103.785803 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1209)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(37500)]