Pairwise fitting emdb-5023 on emdb-1020 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-1020 by gmfit(PID:1537138).

RANK[1] Corr.Coeff:0.337 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-1020)
display:
color:
Structure of a viral DNA gatekeeper at 10 A resolution by cryo-electron microscopy. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.337 0.336 0.332 0.330 0.311 0.309 0.309 0.308 0.237 0.232

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1020.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.174793,-0.984605,-0.000229 179.624286 center 0,0,0 model #1
    move 368.690072,-19.990158,196.546196 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!