Pairwise fitting emdb-1975 on pdb-5j0n by gmfit










Pairwise fitting of target emdb-1975 on reference pdb-5j0n by gmfit(PID:3726260).





RANK[1] Corr.Coeff:0.460

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1975)

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Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1975)]







REFERENCE(pdb-5j0n)

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b'LAMBDA EXCISION HJ INTERMEDIATE                                       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.460
0.430
0.417
0.382
0.380
0.371
0.361
0.356
0.347
0.340







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5j0n"(PDB-format) or 
 "5j0n"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1975.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.387203,-0.863215,-0.323934 130.455743 center 0,0,0 model #1
move 539.960445,167.650193,3.509936 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!