Pairwise fitting emdb-1908 on pdb-5ide by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-5ide by gmfit(PID:3980187).





RANK[1] Corr.Coeff:0.605

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

display:



color:



Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-5ide)

display:



color:


b'CRYO-EM STRUCTURE OF GLUA2/3 AMPA RECEPTOR HETEROTETRAMER (MODEL I)   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.605
0.529
0.521
0.503
0.500
0.465
0.452
0.434
0.423
0.411







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5ide"(PDB-format) or 
 "5ide"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.344630,0.922117,-0.175872 93.759668 center 0,0,0 model #1
move 30.826383,89.532776,304.064531 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!