Pairwise fitting emdb-1908 on pdb-4c0u by gmfit



Pairwise fitting of target emdb-1908 on reference pdb-4c0u by gmfit(PID:1252247).

RANK[1] Corr.Coeff:0.583 [JSmol] [Molmil]
TARGET(emdb-1908)
display:
color:
Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1908)]
REFERENCE(pdb-4c0u)
display:
color:
b'CRYO-EM RECONSTRUCTION OF ENTEROVIRUS 71 IN COMPLEX WITH A ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.583 0.520 0.459 0.445 0.423 0.413 0.400 0.376 0.342 0.321

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4c0u"(PDB-format) or "4c0u"(mmCIF-format), and read it.
  2. Download the Target map "emd_1908.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.690647,-0.668646,-0.275536 82.486546 center 0,0,0 model #1
    move -46.190507,-129.250078,80.373620 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!