Pairwise fitting emdb-1908 on pdb-3ixz by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-3ixz by gmfit(PID:4139850).





RANK[1] Corr.Coeff:0.544

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

display:



color:



Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-3ixz)

display:



color:


b'PIG GASTRIC H+/K+-ATPASE COMPLEXED WITH ALUMINIUM FLUORIDE            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.544
0.492
0.488
0.466
0.455
0.447
0.437
0.425
0.412
0.362







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3ixz"(PDB-format) or 
 "3ixz"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.468997,0.881235,-0.058885 151.504129 center 0,0,0 model #1
move 97.187588,43.403101,147.720662 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!