Pairwise fitting emdb-1908 on pdb-1if0 by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-1if0 by gmfit(PID:2478409).





RANK[1] Corr.Coeff:0.532

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

display:



color:



Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-1if0)

display:



color:


b'PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.532
0.486
0.485
0.484
0.458
0.458
0.442
0.396
0.389
0.349







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1if0"(PDB-format) or 
 "1if0"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.810397,0.485217,0.328362 119.297704 center 0,0,0 model #1
move 259.792254,-9.192799,215.226593 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!