Pairwise fitting emdb-1774 on pdb-4d61 by gmfit










Pairwise fitting of target emdb-1774 on reference pdb-4d61 by gmfit(PID:3751205).





RANK[1] Corr.Coeff:0.701

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1774)

display:



color:



Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1774)]







REFERENCE(pdb-4d61)

display:



color:


b'CRYO-EM STRUCTURES OF RIBOSOMAL 80S COMPLEXES WITH TERMINATION FACTORS' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.701
0.613
0.566
0.544
0.534
0.516
0.513
0.479
0.365
0.351







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4d61"(PDB-format) or 
 "4d61"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1774.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.440091,-0.583952,0.682144 172.929991 center 0,0,0 model #1
move 50.154941,286.033498,54.251350 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!