Pairwise fitting emdb-1770 on pdb-5mmj by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5mmj by gmfit(PID:4122583).





RANK[1] Corr.Coeff:0.901

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5mmj)

display:



color:


b'STRUCTURE OF THE SMALL SUBUNIT OF THE CHLOROPLAST RIBOSOME            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.901
0.881
0.723
0.659
0.647
0.620
0.610
0.609
0.533
0.526







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mmj"(PDB-format) or 
 "5mmj"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.080609,0.865847,-0.493772 103.084540 center 0,0,0 model #1
move 184.118338,169.748098,220.943414 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!