Pairwise fitting emdb-1770 on pdb-5ai7 by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5ai7 by gmfit(PID:3894717).





RANK[1] Corr.Coeff:0.617

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5ai7)

display:



color:


b'PARM DOUBLET MODEL                                                    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.617
0.607
0.590
0.588
0.574
0.455
0.445
0.444
0.440
0.418







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5ai7"(PDB-format) or 
 "5ai7"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.435537,0.853023,-0.287506 93.992219 center 0,0,0 model #1
move 309.920780,315.192747,289.699156 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!