Pairwise fitting emdb-1770 on pdb-4v6t by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-4v6t by gmfit(PID:2136285).





RANK[1] Corr.Coeff:0.620

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-4v6t)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.620
0.614
0.606
0.604
0.602
0.578
0.571
0.567
0.554
0.530







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6t"(PDB-format) or 
 "4v6t"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.995440,0.083959,0.045283 161.721457 center 0,0,0 model #1
move -7.628020,4.081272,-1.359705 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!