Pairwise fitting emdb-1770 on pdb-4a2i by gmfit



Pairwise fitting of target emdb-1770 on reference pdb-4a2i by gmfit(PID:1198910).

RANK[1] Corr.Coeff:0.881 [JSmol] [Molmil]
TARGET(emdb-1770)
display:
color:
30S-002mRNA (after classification) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1770)]
REFERENCE(pdb-4a2i)
display:
color:
b'CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE 30S SUBUNIT IN COMPLEX WITH ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.881 0.725 0.651 0.617 0.608 0.602 0.597 0.590 0.584 0.513

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4a2i"(PDB-format) or "4a2i"(mmCIF-format), and read it.
  2. Download the Target map "emd_1770.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.653233,0.436493,0.618676 173.980357 center 0,0,0 model #1
    move 162.242957,161.802328,167.796351 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!