Pairwise fitting emdb-1770 on pdb-3jam by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-3jam by gmfit(PID:2993487).





RANK[1] Corr.Coeff:0.825

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-3jam)

display:



color:


b'CRYOEM STRUCTURE OF 40S-EIF1A-EIF1 COMPLEX FROM YEAST                 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.825
0.726
0.669
0.656
0.654
0.654
0.647
0.646
0.582
0.574







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jam"(PDB-format) or 
 "3jam"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.738429,0.666739,0.100905 165.890004 center 0,0,0 model #1
move 199.664188,197.863848,200.139885 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!