Pairwise fitting emdb-1770 on pdb-3j7a by gmfit



Pairwise fitting of target emdb-1770 on reference pdb-3j7a by gmfit(PID:1512402).

RANK[1] Corr.Coeff:0.847 [JSmol] [Molmil]
TARGET(emdb-1770)
display:
color:
30S-002mRNA (after classification) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1770)]
REFERENCE(pdb-3j7a)
display:
color:
b'CRYO-EM STRUCTURE OF THE PLASMODIUM FALCIPARUM 80S RIBOSOME BOUND TO ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.847 0.753 0.661 0.654 0.638 0.630 0.615 0.600 0.532 0.511

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j7a"(PDB-format) or "3j7a"(mmCIF-format), and read it.
  2. Download the Target map "emd_1770.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.715640,-0.697474,-0.037262 178.858371 center 0,0,0 model #1
    move 186.692789,279.520339,253.557512 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!