Pairwise fitting emdb-1717 on pdb-4v5h by gmfit










Pairwise fitting of target emdb-1717 on reference pdb-4v5h by gmfit(PID:2103257).





RANK[1] Corr.Coeff:0.857

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1717)

display:



color:



Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1717)]







REFERENCE(pdb-4v5h)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.857
0.682
0.675
0.672
0.670
0.668
0.664
0.648
0.644
0.639







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v5h"(PDB-format) or 
 "4v5h"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1717.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.772688,0.201327,-0.602014 136.643282 center 0,0,0 model #1
move -53.437893,284.123594,131.571309 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!