Pairwise fitting emdb-1711 on pdb-5sy1 by gmfit



Pairwise fitting of target emdb-1711 on reference pdb-5sy1 by gmfit(PID:1072646).

RANK[1] Corr.Coeff:0.597 [JSmol] [Molmil]
TARGET(emdb-1711)
display:
color:
Pyrococcus furiosus RNA Polymerase [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1711)]
REFERENCE(pdb-5sy1)
display:
color:
b'STRUCTURE OF THE STRA6 RECEPTOR FOR RETINOL UPTAKE IN COMPLEX WITH ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.597 0.566 0.539 0.532 0.520 0.511 0.507 0.491 0.486 0.482

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5sy1"(PDB-format) or "5sy1"(mmCIF-format), and read it.
  2. Download the Target map "emd_1711.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.685945,-0.517495,-0.511545 163.631895 center 0,0,0 model #1
    move 123.028744,121.760815,115.956446 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!