Pairwise fitting emdb-1711 on pdb-3jd4 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-3jd4 by gmfit(PID:3593626).





RANK[1] Corr.Coeff:0.719

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-3jd4)

display:



color:


b'GLUTAMATE DEHYDROGENASE IN COMPLEX WITH NADH AND GTP, CLOSED          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.719
0.688
0.687
0.657
0.655
0.642
0.639
0.638
0.637
0.637







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jd4"(PDB-format) or 
 "3jd4"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.409095,-0.821064,0.398115 77.225646 center 0,0,0 model #1
move 73.757113,79.694939,81.828113 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!