Pairwise fitting emdb-1711 on pdb-3j95 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-3j95 by gmfit(PID:2982913).





RANK[1] Corr.Coeff:0.644

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-3j95)

display:



color:


b'STRUCTURE OF ADP-BOUND N-ETHYLMALEIMIDE SENSITIVE FACTOR DETERMINED BY' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.644
0.584
0.568
0.567
0.567
0.565
0.555
0.555
0.553
0.548







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j95"(PDB-format) or 
 "3j95"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.745050,0.466546,0.476693 138.964679 center 0,0,0 model #1
move 2.163269,-0.080794,7.410624 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!