Pairwise fitting emdb-1711 on pdb-3j94 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-3j94 by gmfit(PID:3792257).





RANK[1] Corr.Coeff:0.672

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-3j94)

display:



color:


b'STRUCTURE OF ATP-BOUND N-ETHYLMALEIMIDE SENSITIVE FACTOR DETERMINED BY' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.672
0.619
0.617
0.606
0.603
0.603
0.587
0.586
0.576
0.574







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j94"(PDB-format) or 
 "3j94"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.464885,-0.773253,-0.431234 126.170741 center 0,0,0 model #1
move -7.854785,0.267043,10.908824 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!