Pairwise fitting emdb-1618 on pdb-5ipt by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-5ipt by gmfit(PID:3033350).





RANK[1] Corr.Coeff:0.495

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

display:



color:



3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-5ipt)

display:



color:


b'CRYO-EM STRUCTURE OF GLUN1/GLUN2B NMDA RECEPTOR IN THE DCKA/D-APV-    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.495
0.402
0.370
0.362
0.351
0.337
0.316
0.307
0.225
0.220







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5ipt"(PDB-format) or 
 "5ipt"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.429884,0.522949,-0.736019 175.075713 center 0,0,0 model #1
move 203.740221,207.448303,233.238330 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!