Pairwise fitting emdb-1618 on pdb-4bgn by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-4bgn by gmfit(PID:3981682).





RANK[1] Corr.Coeff:0.290

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-4bgn)

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b'CRYO-EM STRUCTURE OF THE NAVCT VOLTAGE-GATED SODIUM CHANNEL           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.290
0.238
0.230
0.229
0.219
0.213
0.205
0.194
0.140
0.118







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bgn"(PDB-format) or 
 "4bgn"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.441121,0.637482,-0.631688 151.818259 center 0,0,0 model #1
move 3.587339,269.390124,107.149096 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!