Pairwise fitting emdb-1618 on pdb-3j9b by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-3j9b by gmfit(PID:4118786).





RANK[1] Corr.Coeff:0.591

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

display:



color:



3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-3j9b)

display:



color:


b'ELECTRON CRYO-MICROSCOPY OF AN RNA POLYMERASE                         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.591
0.504
0.491
0.452
0.436
0.426
0.378
0.377
0.214
0.199







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9b"(PDB-format) or 
 "3j9b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.648721,-0.111116,0.752871 179.743765 center 0,0,0 model #1
move 290.267459,288.292994,251.721169 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!