Pairwise fitting emdb-1618 on pdb-2r1g by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-2r1g by gmfit(PID:3669065).





RANK[1] Corr.Coeff:0.482

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-2r1g)

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b'COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGHBORING    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.482
0.349
0.313
0.308
0.278
0.232
0.225
0.221
0.196
0.193







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2r1g"(PDB-format) or 
 "2r1g"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.209060,-0.769307,0.603706 111.486316 center 0,0,0 model #1
move 129.933757,19.030142,-62.409492 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!