Pairwise fitting emdb-1565 on pdb-4v6y by gmfit










Pairwise fitting of target emdb-1565 on reference pdb-4v6y by gmfit(PID:2466177).





RANK[1] Corr.Coeff:0.936

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1565)

display:



color:



Recognition of Phe-tRNAPhe, Trp-tRNATrp and  : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1565)]







REFERENCE(pdb-4v6y)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.936
0.781
0.764
0.748
0.743
0.742
0.718
0.715
0.712
0.709







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6y"(PDB-format) or 
 "4v6y"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1565.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.793223,-0.197811,0.575906 134.958911 center 0,0,0 model #1
move 178.731299,184.302887,188.035136 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!