Pairwise fitting emdb-1565 on pdb-3jcd by gmfit



Pairwise fitting of target emdb-1565 on reference pdb-3jcd by gmfit(PID:1113603).

RANK[1] Corr.Coeff:0.944 [JSmol] [Molmil]
TARGET(emdb-1565)
display:
color:
Recognition of Phe-tRNAPhe, Trp-tRNATrp and : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1565)]
REFERENCE(pdb-3jcd)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.944 0.779 0.774 0.771 0.757 0.747 0.734 0.715 0.711 0.709

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3jcd"(PDB-format) or "3jcd"(mmCIF-format), and read it.
  2. Download the Target map "emd_1565.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.775468,-0.352941,0.523528 63.493298 center 0,0,0 model #1
    move 203.748491,206.447954,209.768566 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!