Pairwise fitting emdb-1559 on pdb-4uxy by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-4uxy by gmfit(PID:1474799).

RANK[1] Corr.Coeff:0.625 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-4uxy)
display:
color:
b'CONSERVED MECHANISMS OF MICROTUBULE-STIMULATED ADP RELEASE, ATP ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.625 0.618 0.603 0.602 0.575 0.572 0.569 0.567 0.555 0.554

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4uxy"(PDB-format) or "4uxy"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.286566,-0.645772,0.707713 125.887279 center 0,0,0 model #1
    move 970.853614,635.435838,-42.192159 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!