Pairwise fitting emdb-1559 on pdb-4aqw by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-4aqw by gmfit(PID:3798675).





RANK[1] Corr.Coeff:0.622

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-4aqw)

display:



color:


b'MODEL OF HUMAN KINESIN-5 MOTOR DOMAIN (1II6, 3HQD) AND MAMMALIAN      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.622
0.621
0.606
0.603
0.587
0.580
0.576
0.575
0.571
0.562







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4aqw"(PDB-format) or 
 "4aqw"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.222494,-0.917360,0.330072 88.935011 center 0,0,0 model #1
move 523.259571,-655.604147,-291.412494 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!