Pairwise fitting emdb-1559 on pdb-3j8y by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-3j8y by gmfit(PID:1389826).

RANK[1] Corr.Coeff:0.684 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-3j8y)
display:
color:
b'HIGH-RESOLUTION STRUCTURE OF ATP ANALOG-BOUND KINESIN ON MICROTUBULES ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.684 0.673 0.651 0.647 0.627 0.620 0.608 0.608 0.595 0.592

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j8y"(PDB-format) or "3j8y"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.066045,-0.813694,0.577529 95.353396 center 0,0,0 model #1
    move 729.337872,-176.692130,-378.732651 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!